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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15679611_15681056_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15679611 - 15681056
Intron Length:
1446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGGCA
5'SS Class:
major
3'SS Sequence:
AATTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTCGTGATAATT
Flanking Amino Acid:
EDSEKQELKKMIDSLTEKLE
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
66.7
39.1
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
85.8
0.8
0.8
77.7
40.7
Minor 5ss
35
-1.7
3.5
47.9
47.8
Minor BPS
45.3
-0.2
2.3
67.5
44.1

Associated Gene:

Gene:
TMF1
Ensembl Gene ID:
ENSAPLG00000013459
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047130
15676343 - 15691043
14701
ENSAPLT00000014058
15676343 - 15691043
14701