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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15681161_15682001_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15681161 - 15682001
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
ATTTTAAATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAATTTTAAAT
Flanking Amino Acid:
RLEEAYDNLKDEVFRMKEET
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.3
0.46
1
65.1
39.9
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
65
0.55
1.4
78.52
37.3

Associated Gene:

Gene:
TMF1
Ensembl Gene ID:
ENSAPLG00000013459
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047130
15676343 - 15691043
14701
ENSAPLT00000014058
15676343 - 15691043
14701