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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15684844_15685021_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15684844 - 15685021
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAG
5'SS Class:
major
3'SS Sequence:
TTTCTGATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATGTTTAATT
Flanking Amino Acid:
LRQEISELQQRLQEAESRNQ
Intron Amino Acid Position:
814

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
59.6
41.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.3
0.77
0.8
81.7
34.6
Minor 5ss
35.1
-1.7
3.4
46.5
48.8
Minor BPS
64.5
0.53
1.7
78.82
37.8

Associated Gene:

Gene:
TMF1
Ensembl Gene ID:
ENSAPLG00000013459
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014058
15676343 - 15691043
14701