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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15685800_15686108_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15685800 - 15686108
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTTCCTGTACCT
Flanking Amino Acid:
KLKKMEDENSRYEVELEGLK
Intron Amino Acid Position:
930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
78.6
0.64
0.8
73.9
29.6
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
48.1
-0
2.3
72.56
44.8

Associated Gene:

Gene:
TMF1
Ensembl Gene ID:
ENSAPLG00000013459
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047130
15676343 - 15691043
14701
ENSAPLT00000014058
15676343 - 15691043
14701