Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15686179_15686257_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15686179 - 15686257

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTGTCT

5'SS Class:

major

3'SS Sequence:

TGATTTTTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

CCTGTATTGATT

Flanking Amino Acid:

KTLEDAKKEKTLLTTQLEME

Intron Amino Acid Position:

954

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.1

67.6

37.9

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

81.4

0.71

0.8

77.4

36.7

Minor 5ss

45.5

-0.5

3.1

65.8

45.4

Minor BPS

48.1

-0

1.7

62.65

42.5

Associated Gene:

Gene:

TMF1

Ensembl Gene ID:

ENSAPLG00000013459

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047130

15676343 - 15691043

14701

ENSAPLT00000014058

15676343 - 15691043

14701