Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15703417_15704256_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15703417 - 15704256

Intron Length:

840

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTATGGAAT

5'SS Class:

major

3'SS Sequence:

TCTTCCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

TTCTTGTGATCT

Flanking Amino Acid:

IHLKTFDSKRVCFKEAVFSL

Intron Amino Acid Position:

309

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.58

1.1

71.3

40.1

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

89.2

0.88

0.6

84.3

23.5

Minor 5ss

39.6

-1.2

3.2

48.4

47.6

Minor BPS

46.7

-0.1

2.3

71.9

45.2

Associated Gene:

Gene:

EOGT

Ensembl Gene ID:

ENSAPLG00000013712

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021097

15693481 - 15711368

17888

ENSAPLT00000014343

15693481 - 15710467

16987