About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15704945_15706017_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15704945 - 15706017
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
TGCTTCATAGCT
Flanking Amino Acid:
RLNITQEGPKDGKIRVTILA
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
75.7
29.3
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
85.6
0.8
0.6
84.6
23.1
Minor 5ss
43.3
-0.7
2.8
55.5
48.7
Minor BPS
52.7
0.16
1.9
73.33
43.4

Associated Gene:

Gene:
EOGT
Ensembl Gene ID:
ENSAPLG00000013712
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021097
15693481 - 15711368
17888