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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15710026_15710320_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15710026 - 15710320
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGTG
5'SS Class:
major
3'SS Sequence:
TTTATTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTATTTTATTT
Flanking Amino Acid:
KRNKVFPQDQGHHPTLGEHP
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.7
40.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.3
0.88
0.7
89
27.8
Minor 5ss
32.9
-2
3.6
46.5
48.8
Minor BPS
54.8
0.23
1.6
71.35
40.7

Associated Gene:

Gene:
EOGT
Ensembl Gene ID:
ENSAPLG00000013712
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014343
15693481 - 15710467
16987
ENSAPLT00000021097
15693481 - 15711368
17888