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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15756113_15759064_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15756113 - 15759064
Intron Length:
2952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TGTTCTTTCACT
Flanking Amino Acid:
DWNKILAKSPRMRFCAKSML
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
77.7
0.69
1
81
30.2
Major PPT
82.6
0.73
0.8
73.9
36.8
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
72.8
0.8
1.7
88.47
36.7

Associated Gene:

Gene:
TAFA4
Ensembl Gene ID:
ENSAPLG00000014143
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043062
15755976 - 15801509
45534
ENSAPLT00000029135
15755976 - 15795081
39106
ENSAPLT00000014726
15755976 - 15805423
49448