Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15794699_15801258_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15794699 - 15801258

Intron Length:

6560

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCAGT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTTTCAAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCCCAT

U12 Branch Point Sequence:

TCTTTTTTCAAG

Flanking Amino Acid:

TTRAQPSCVEASIVLQKWWC

Intron Amino Acid Position:

118

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.95

0.9

81.8

38.5

Major BPS

72.3

0.55

1.2

80.7

33.2

Major PPT

82.6

0.73

82.5

32.9

Minor 5ss

41.1

-1

2.9

57.9

46.4

Minor BPS

49.3

-0.2

1.9

59.29

43.1

Associated Gene:

Gene:

TAFA4

Ensembl Gene ID:

ENSAPLG00000014143

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043062

15755976 - 15801509

45534

ENSAPLT00000014726

15755976 - 15805423

49448