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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15801384_15805383_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15801384 - 15805383
Intron Length:
4000

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTGAT
U12 Branch Point Sequence:
TCTTCTTTTATA
Flanking Amino Acid:
SSGNKVKTTKVTR*
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.16
0.7
89.2
23.6
Major BPS
70.8
0.52
1.2
63.4
44.3
Major PPT
87.7
0.85
0.6
83.7
24.6
Minor 5ss
25.7
-2.8
3.6
34.4
41.2
Minor BPS
66.7
0.52
1.6
74.49
37.5

Associated Gene:

Gene:
TAFA4
Ensembl Gene ID:
ENSAPLG00000014143
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014726
15755976 - 15805423
49448