About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15817186_15821071_F

Intron Information:

Intron Rank:
126308
Intron Class:
major
Intron Phase:
Intron Coordinates:
15817186 - 15821071
Intron Length:
3886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
GGAGCTGGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
71.6
0.54
1
72
33.1
Major PPT
100
1.12
0.4
100
0
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
38.8
-0.8
2
43.89
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018043
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040926
15814436 - 15825384
10949