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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15821143_15825138_F

Intron Information:

Intron Rank:
126309
Intron Class:
major
Intron Phase:
Intron Coordinates:
15821143 - 15825138
Intron Length:
3996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTCCTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
73.9
32.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
81.8
0.71
0.9
77.5
35.8
Minor 5ss
35.9
-1.6
3.3
46.4
48.9
Minor BPS
89.6
1.33
0.7
99.24
21.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018043
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040926
15814436 - 15825384
10949