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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15869041_15873693_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15869041 - 15873693
Intron Length:
4653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCGT
5'SS Class:
major
3'SS Sequence:
TTTCTTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ACTTTCTTACTG
Flanking Amino Acid:
ATGNKIKTTRIHPRT*
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
66.4
45.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
86.7
0.83
0.7
82.1
28.2
Minor 5ss
37.2
-1.4
3
46.9
42.5
Minor BPS
57.8
0.11
1.7
60.57
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014295
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021004
15869023 - 16093488
224466
ENSAPLT00000014901
15869023 - 16079630
210608
ENSAPLT00000024370
15869023 - 16086926
217904