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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15872586_15873693_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15872586 - 15873693
Intron Length:
1108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCGT
5'SS Class:
major
3'SS Sequence:
TAACATTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACA
Flanking Amino Acid:
ATGNKIKTTRAFC*
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
66.4
45.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.3
0.57
1
65.8
44.5
Minor 5ss
37.2
-1.4
3
46.9
42.5
Minor BPS
80.5
0.95
1
83.59
30.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014295
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039831
15872264 - 16086926
214663