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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15873819_15911167_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15873819 - 15911167
Intron Length:
37349

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTCTTTTATCT
Flanking Amino Acid:
TTRNRPSCVDASIVIGKWWC
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
1
82.6
32.9
Major BPS
100
1.24
0.5
100
0
Major PPT
87
0.83
0.7
85.8
28.4
Minor 5ss
25.9
-2.8
3.6
33.6
35.6
Minor BPS
61.1
0.43
1.6
77.62
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014295
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024370
15869023 - 16086926
217904
ENSAPLT00000039873
15871624 - 16081674
210051
ENSAPLT00000021004
15869023 - 16093488
224466
ENSAPLT00000039869
15873538 - 16086926
213389
ENSAPLT00000014903
15871624 - 16079563
207940
ENSAPLT00000039831
15872264 - 16086926
214663
ENSAPLT00000014901
15869023 - 16079630
210608
ENSAPLT00000036128
15871624 - 16079630
208007