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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_15911309_16079442_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15911309 - 16079442
Intron Length:
168134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACTG
5'SS Class:
major
3'SS Sequence:
TTTTTTCTGCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
TFQQHHLHRPEGGTCEVIAA
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.4
45.1
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
85.7
0.8
0.9
81.2
36.5
Minor 5ss
34.2
-1.8
3.5
46.9
48.4
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014295
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039869
15873538 - 16086926
213389
ENSAPLT00000039831
15872264 - 16086926
214663
ENSAPLT00000024370
15869023 - 16086926
217904
ENSAPLT00000021004
15869023 - 16093488
224466