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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16079134_16079442_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16079134 - 16079442
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACTG
5'SS Class:
major
3'SS Sequence:
CCCTTTCATGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTATTTCTATTT
Flanking Amino Acid:
TFQQHHLHRPVLEWVYNTER
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.4
45.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
77.6
0.62
0.8
72.7
31
Minor 5ss
34.2
-1.8
3.5
46.9
48.4
Minor BPS
49.6
0.05
1.9
72.66
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014295
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014903
15871624 - 16079563
207940