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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16079564_16081631_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
16079564 - 16081631
Intron Length:
2068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GTCTATCTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
74.8
0.56
1
74.2
40.7
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
49
-0
1.8
61.53
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014295
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039873
15871624 - 16081674
210051
ENSAPLT00000024370
15869023 - 16086926
217904