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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16206415_16235906_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16206415 - 16235906
Intron Length:
29492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GTTTCTTTCACA
Flanking Amino Acid:
NDALEAAQRLKAKEIVLKAQ
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.8
33.2
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
84.7
0.78
0.8
79.7
32.4
Minor 5ss
41.3
-1
2.8
49.5
41.2
Minor BPS
70
0.62
1.7
79.83
36.4

Associated Gene:

Gene:
SUCLG2
Ensembl Gene ID:
ENSAPLG00000014378
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015029
16183673 - 16295212
111540