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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16243321_16246202_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16243321 - 16246202
Intron Length:
2882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTTGA
5'SS Class:
major
3'SS Sequence:
TGATCAAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
AATCTCTTGATC
Flanking Amino Acid:
LGFKGPLQQQAADQIKKLYN
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
71.1
37.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
60.7
0.24
1
57.3
42.4
Minor 5ss
39.7
-1.2
2.8
49.9
46.3
Minor BPS
62.3
0.37
1.2
65.78
33.2

Associated Gene:

Gene:
SUCLG2
Ensembl Gene ID:
ENSAPLG00000014378
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015029
16183673 - 16295212
111540