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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16246300_16249922_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16246300 - 16249922
Intron Length:
3623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTATATTT
Flanking Amino Acid:
NPFGETPEGQVVCFDAKINF
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.3
0.86
0.6
89.2
19.7
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
49.9
0.07
1.8
72.8
38.7

Associated Gene:

Gene:
SUCLG2
Ensembl Gene ID:
ENSAPLG00000014378
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015029
16183673 - 16295212
111540