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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16250085_16251155_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16250085 - 16251155
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCAATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTTCCACAAAT
Flanking Amino Acid:
IGLDGNIACFVNGAGLAMAT
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.9
0.7
0.8
74.7
33.6
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
55.4
0.25
2
78.91
42.6

Associated Gene:

Gene:
SUCLG2
Ensembl Gene ID:
ENSAPLG00000014378
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015029
16183673 - 16295212
111540