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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16251299_16288501_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16251299 - 16288501
Intron Length:
37203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AATATATTAAAA
Flanking Amino Acid:
AFKLLTADPKVEAILVNIFG
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
86.3
0.82
0.7
80.7
24.7
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
50.7
0.02
1.7
62.5
36.5

Associated Gene:

Gene:
SUCLG2
Ensembl Gene ID:
ENSAPLG00000014378
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015029
16183673 - 16295212
111540