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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16378471_16382091_R

Intron Information:

Intron Rank:
143302
Intron Class:
major
Intron Phase:
Intron Coordinates:
16378471 - 16382091
Intron Length:
3621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
91.1
0.92
0.6
84.9
30
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024416
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041856
16377148 - 16382148
5001