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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16397081_16410073_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16397081 - 16410073
Intron Length:
12993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ACGCTTTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CCCTTTCTAACG
Flanking Amino Acid:
SIMLATTYGAGPISSILVNR
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73.3
0.52
0.9
64.9
40.7
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
48.4
-0.2
1.8
50.41
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014560
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015183
16387735 - 16410327
22593