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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16431263_16433978_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16431263 - 16433978
Intron Length:
2716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGTGC
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATGTTTTATTT
Flanking Amino Acid:
EYKDNIYVLQGEFFLCYDPQ
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
64.8
42.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
88.8
0.87
0.6
84
23.9
Minor 5ss
36.6
-1.5
3.3
41.6
45.3
Minor BPS
54.8
0.23
1.6
71.82
40.2

Associated Gene:

Gene:
KBTBD8
Ensembl Gene ID:
ENSAPLG00000014724
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033542
16429799 - 16437841
8043
ENSAPLT00000020030
16430799 - 16437661
6863
ENSAPLT00000015337
16430799 - 16436072
5274
ENSAPLT00000040574
16429799 - 16436047
6249