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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16435094_16435730_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16435094 - 16435730
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAGAG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TACAAATAAACT
Flanking Amino Acid:
NVLAAISPYFRSMFTSGLTE
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
59.5
39.7
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
28.1
-2.5
3.5
37.6
47.2
Minor BPS
45.4
-0.2
2.1
64.34
45.1

Associated Gene:

Gene:
KBTBD8
Ensembl Gene ID:
ENSAPLG00000014724
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015337
16430799 - 16436072
5274
ENSAPLT00000040574
16429799 - 16436047
6249
ENSAPLT00000033542
16429799 - 16437841
8043
ENSAPLT00000020030
16430799 - 16437661
6863