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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16538003_16568975_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16538003 - 16568975
Intron Length:
30973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CTTACTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CTTACTTTAACA
Flanking Amino Acid:
PRDLPRWPRHVNLSYNKLTE
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
67.9
37.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
77.4
0.62
0.9
73
36
Minor 5ss
33.5
-1.9
2.7
39.1
38.9
Minor BPS
76.4
0.82
1.2
79.82
36.4

Associated Gene:

Gene:
LRIG1
Ensembl Gene ID:
ENSAPLG00000014836
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015464
16537431 - 16620299
82869
ENSAPLT00000028060
16537431 - 16620299
82869
ENSAPLT00000024175
16537431 - 16620432
83002