About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16573745_16591621_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16573745 - 16591621
Intron Length:
17877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
CTGACCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TCCTCCTGACCA
Flanking Amino Acid:
PASSSVRALHLHHNRIRSIE
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
62.6
38.8
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
71.1
0.48
1
66.5
39.2
Minor 5ss
38
-1.4
3
53.5
43.7
Minor BPS
57.7
0.24
1.8
67.78
44.7

Associated Gene:

Gene:
LRIG1
Ensembl Gene ID:
ENSAPLG00000014836
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028060
16537431 - 16620299
82869
ENSAPLT00000024175
16537431 - 16620432
83002
ENSAPLT00000015464
16537431 - 16620299
82869