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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16591760_16592842_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16591760 - 16592842
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TGATTTATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCTGCTGTGATT
Flanking Amino Acid:
CFPQGLHIKELYLGSNRIST
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
77.3
33.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79.9
0.67
0.9
74.2
40
Minor 5ss
43.6
-0.7
3.1
68.1
42.7
Minor BPS
48.5
-0
2.1
69.68
42.6

Associated Gene:

Gene:
LRIG1
Ensembl Gene ID:
ENSAPLG00000014836
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028060
16537431 - 16620299
82869
ENSAPLT00000024175
16537431 - 16620432
83002
ENSAPLT00000015464
16537431 - 16620299
82869