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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16601477_16604630_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16601477 - 16604630
Intron Length:
3154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
GTCCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
TGATTATGAGCT
Flanking Amino Acid:
AFKGLKNLRVLELDHNDISG
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
66.5
40.1
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
73.8
0.54
0.8
65.2
36.2
Minor 5ss
43.5
-0.7
2.8
62.6
42
Minor BPS
47.3
-0.1
1.9
67.98
42

Associated Gene:

Gene:
LRIG1
Ensembl Gene ID:
ENSAPLG00000014836
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028060
16537431 - 16620299
82869
ENSAPLT00000024175
16537431 - 16620432
83002
ENSAPLT00000015464
16537431 - 16620299
82869