About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16614209_16614280_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16614209 - 16614280
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AC
5'SS Sequence:
CAC|GTGCGGGCG
5'SS Class:
weak_major
3'SS Sequence:
CACCTTCGCCCAC|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACGTCAC
U12 Branch Point Sequence:
CCATCCTGCACC
Flanking Amino Acid:
HNAEIENFAHEGRYQCIITN
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57
0.17
1.3
48.5
42.2
Major BPS
53.6
0.09
1.2
57
39.5
Major PPT
38.3
-0.6
3.1
49.3
39
Minor 5ss
24.4
-2.9
3.4
28.2
36.9
Minor BPS
49.7
-0
2
59.79
45.1

Associated Gene:

Gene:
LRIG1
Ensembl Gene ID:
ENSAPLG00000014836
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024175
16537431 - 16620432
83002