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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16615239_16615771_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16615239 - 16615771
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CAATAATTAATT
Flanking Amino Acid:
VLANATLTVLETPSLIHPLE
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.5
39.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.7
0.76
0.8
78.3
30.2
Minor 5ss
39.2
-1.2
3.1
48.2
47.4
Minor BPS
52.9
0.17
1.8
68.54
41.9

Associated Gene:

Gene:
LRIG1
Ensembl Gene ID:
ENSAPLG00000014836
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024175
16537431 - 16620432
83002
ENSAPLT00000015464
16537431 - 16620299
82869
ENSAPLT00000028060
16537431 - 16620299
82869