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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16618421_16619540_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16618421 - 16619540
Intron Length:
1120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAAT
5'SS Class:
major
3'SS Sequence:
TCCTCCCGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTGAC
U12 Branch Point Sequence:
TCCTCCCGCACA
Flanking Amino Acid:
ADGMLVPDKTGYGLPVVCAD
Intron Amino Acid Position:
1015

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.2
36
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
69.7
0.44
0.9
64.1
31.2
Minor 5ss
33.4
-1.9
3.3
48.6
47.1
Minor BPS
46
-0.3
2.2
60.63
45.2

Associated Gene:

Gene:
LRIG1
Ensembl Gene ID:
ENSAPLG00000014836
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028060
16537431 - 16620299
82869
ENSAPLT00000024175
16537431 - 16620432
83002
ENSAPLT00000015464
16537431 - 16620299
82869