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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16629251_16630658_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16629251 - 16630658
Intron Length:
1408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
ATTTTCAGACTC
Flanking Amino Acid:
VAKTRIMLAKAGSATASGNV
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
84
0.77
0.9
80.6
37
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
46.4
-0.3
1.9
62.12
37.3

Associated Gene:

Gene:
SLC25A26
Ensembl Gene ID:
ENSAPLG00000015089
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015762
16625374 - 16708021
82648
ENSAPLT00000033944
16625734 - 16708021
82288
ENSAPLT00000033012
16625374 - 16708021
82648