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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16630724_16638430_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16630724 - 16638430
Intron Length:
7707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAAAGG
5'SS Class:
major
3'SS Sequence:
TTGGTTTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
AATGTCTCACTT
Flanking Amino Acid:
WQSAVCGAFAGGFAAAVTTP
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.1
56
43
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
73.8
0.54
1
72.8
42.2
Minor 5ss
25.7
-2.8
3
31.4
42.4
Minor BPS
46.6
-0.1
1.8
63.02
41.7

Associated Gene:

Gene:
SLC25A26
Ensembl Gene ID:
ENSAPLG00000015089
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033012
16625374 - 16708021
82648
ENSAPLT00000015762
16625374 - 16708021
82648
ENSAPLT00000033944
16625734 - 16708021
82288