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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16638501_16649201_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16638501 - 16649201
Intron Length:
10701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTCTTTAAAC
Flanking Amino Acid:
VQFPLWEALKDLWSWKQGHV
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.1
0.5
1
66.6
37.5
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
75.3
0.77
1.3
79.33
36

Associated Gene:

Gene:
SLC25A26
Ensembl Gene ID:
ENSAPLG00000015089
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033944
16625734 - 16708021
82288
ENSAPLT00000033012
16625374 - 16708021
82648
ENSAPLT00000015762
16625374 - 16708021
82648