About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16649247_16687006_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16649247 - 16687006
Intron Length:
37760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
CCCACCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGTAA
U12 Branch Point Sequence:
TTTTTCCCACCT
Flanking Amino Acid:
RGYKSTVLREIPFSLVQFPL
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
57.3
0.18
1.4
57.7
41.3
Major PPT
72
0.49
0.8
64.7
30.6
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
50.4
0.09
2.1
80.59
41.2

Associated Gene:

Gene:
SLC25A26
Ensembl Gene ID:
ENSAPLG00000015089
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033944
16625734 - 16708021
82288
ENSAPLT00000033012
16625374 - 16708021
82648
ENSAPLT00000015762
16625374 - 16708021
82648