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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16687055_16688446_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16687055 - 16688446
Intron Length:
1392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGGTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTCCCTATAGCT
Flanking Amino Acid:
RILSHTLYHEGIQGLYRGYK
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
79.5
0.66
1
72.2
42.7
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
51.5
0.13
1.9
74.33
42.4

Associated Gene:

Gene:
SLC25A26
Ensembl Gene ID:
ENSAPLG00000015089
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033944
16625734 - 16708021
82288
ENSAPLT00000033012
16625374 - 16708021
82648
ENSAPLT00000015762
16625374 - 16708021
82648