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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16688552_16703833_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16688552 - 16703833
Intron Length:
15282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CGCTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGTAT
U12 Branch Point Sequence:
TGCTCCCTGATT
Flanking Amino Acid:
HMVAASFGEVVACLIRVPSE
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.4
37.3
Major BPS
62.7
0.32
1.4
63.4
44
Major PPT
81.4
0.71
0.8
75.8
32.7
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
61
0.43
1.7
76.68
40.1

Associated Gene:

Gene:
SLC25A26
Ensembl Gene ID:
ENSAPLG00000015089
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033944
16625734 - 16708021
82288
ENSAPLT00000033012
16625374 - 16708021
82648
ENSAPLT00000015762
16625374 - 16708021
82648