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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16703944_16704284_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16703944 - 16704284
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTGAATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTAAAT
U12 Branch Point Sequence:
TATGCTTGAATT
Flanking Amino Acid:
NSIISTFPSTAAAFFITYEN
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
64.6
0.36
1.3
73.3
39.1
Major PPT
72
0.5
1
66.9
42.9
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
63.2
0.49
1.5
77.76
39

Associated Gene:

Gene:
SLC25A26
Ensembl Gene ID:
ENSAPLG00000015089
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033944
16625734 - 16708021
82288