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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_167308_170077_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
167308 - 170077
Intron Length:
2770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
TCTGTGTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TTTTCCTTAAAG
Flanking Amino Acid:
ALLNITFKYDNCTPYLNSVG
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.61
1
69.1
38.5
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
79.1
0.65
0.9
76.9
37.3
Minor 5ss
41.8
-0.9
2.8
54.8
43.5
Minor BPS
83.7
0.92
1.3
85.06
33.6

Associated Gene:

Gene:
IL17RD
Ensembl Gene ID:
ENSAPLG00000002958
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003029
136259 - 183602
47344