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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16825790_16936305_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16825790 - 16936305
Intron Length:
110516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AAATAAATAAAT
Flanking Amino Acid:
AACQKHGNQQGSRLNKDLRH
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.2
34.2
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
89.8
0.89
0.7
84.7
30.1
Minor 5ss
27.1
-2.6
3.2
35
41.6
Minor BPS
43.9
-0.3
2
62.13
40.1

Associated Gene:

Gene:
MAGI1
Ensembl Gene ID:
ENSAPLG00000015151
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015821
16825669 - 17102662
276994