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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1686164_1686900_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1686164 - 1686900
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GTTTTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTCAACTGAATT
Flanking Amino Acid:
FWSIADFVVLFFQSIIQPDL
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.9
0.85
0.8
85.4
34.1
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
56.7
0.29
1.7
74.82
41.8

Associated Gene:

Gene:
SELENOK
Ensembl Gene ID:
ENSAPLG00000012969
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013500
1686054 - 1687652
1599