About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1686979_1687564_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1686979 - 1687564
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATTTTTC
5'SS Class:
weak_major
3'SS Sequence:
GTTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
GTTTACTAAATA
Flanking Amino Acid:
SSYLGHNDGRGHPGNPRRRM
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
67.7
38.4
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
86.6
0.82
0.7
85.4
29.4
Minor 5ss
51.8
0.06
2.3
61.5
43.5
Minor BPS
60.2
0.32
1.8
73.11
38.8

Associated Gene:

Gene:
SELENOK
Ensembl Gene ID:
ENSAPLG00000012969
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013500
1686054 - 1687652
1599