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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1692641_1693240_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1692641 - 1693240
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATATTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTCTTATATT
Flanking Amino Acid:
YLEIPLKDLKYYRCILLIPD
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.1
30.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.1
0.74
0.9
81.8
33.8
Minor 5ss
40.1
-1.1
3.1
55
49.2
Minor BPS
53.8
0.2
2
76.14
40.9

Associated Gene:

Gene:
ACTR8
Ensembl Gene ID:
ENSAPLG00000012977
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013527
1689929 - 1699226
9298