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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_16936423_17014614_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16936423 - 17014614
Intron Length:
78192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAATATTTATTT
Flanking Amino Acid:
RDNLYRHAVPCTTRPPREGE
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.1
32.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
38.6
-1.3
2.8
51.7
39.2
Minor BPS
53.5
0.19
1.7
70.94
40.1

Associated Gene:

Gene:
MAGI1
Ensembl Gene ID:
ENSAPLG00000015151
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020095
16784897 - 17103079
318183
ENSAPLT00000047968
16784897 - 17103079
318183
ENSAPLT00000015821
16825669 - 17102662
276994
ENSAPLT00000041725
16784897 - 17103079
318183
ENSAPLT00000027158
16784897 - 17103079
318183
ENSAPLT00000025942
16784897 - 17103079
318183