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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1694689_1695429_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1694689 - 1695429
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
LKETFCHLDQDISGLQDHEF
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.9
0.76
0.8
78.5
34.7
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
ACTR8
Ensembl Gene ID:
ENSAPLG00000012977
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013527
1689929 - 1699226
9298