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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1696213_1696639_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1696213 - 1696639
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATATTTAAAC
Flanking Amino Acid:
LLATQSKQEQSAKATADRKS
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
73.6
30.4
Major BPS
100
1.24
0.5
100
0
Major PPT
78.7
0.65
1
83.4
30.8
Minor 5ss
33.6
-1.9
3.1
42.4
45.1
Minor BPS
64.4
0.43
1.6
73.76
36.3

Associated Gene:

Gene:
ACTR8
Ensembl Gene ID:
ENSAPLG00000012977
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013527
1689929 - 1699226
9298